[BioC] Complete variant toolbox: gmapR/VariantTools/VariantAnnotation
julian.gehring at embl.de
Sun Dec 8 19:13:59 CET 2013
In this case, I assume that you are referring to columns added by
functions of the 'VariantTools' and 'gmapR' packages. These are simply
additional columns in a 'VRanges' object and not part of a standard
'VRanges' class. 'help("tallyVariants", package = "VariantTools")' goes
a bit into the details.
On 12/08/2013 06:54 PM, Thomas Girke wrote:
> Hi Julian,
> Yes, I have seen it, but I cannot find explanations for things like
> "n.read.pos", "mean.quality.ref", etc. In most cases I can guess what
> it is but often I am not sure.
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