[BioC] Complete variant toolbox: gmapR/VariantTools/VariantAnnotation

Thomas Girke thomas.girke at ucr.edu
Sun Dec 8 18:54:24 CET 2013

Hi Julian,

Yes, I have seen it, but I cannot find explanations for things like
"n.read.pos", "mean.quality.ref", etc. In most cases I can guess what
it is but often I am not sure.


On Sun, Dec 08, 2013 at 05:19:02PM +0000, Julian Gehring wrote:
> Hi Thomas,
> I'm not sure if I understood you correctly, but did you have a look at 
> the 'VRanges' help (by calling '?VRanges')?  This lists the different 
> slots and gives a short explanation for each.
> Best wishes
> Julian
> On 12/08/2013 06:08 PM, Thomas Girke wrote:
> > (2) The VRanges class is another great resource for filtering variant calls.
> > What I was not able to locate though is a description/definition of the content
> > of its different columns/components. Is something like this available
> > somewhere?

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