[BioC] Issue installing rhdf5 package on R-3.0.2

shivali [guest] guest at bioconductor.org
Wed Dec 11 10:23:04 CET 2013

AIX- 5.3

        xlC_r -q64 -I/gpfs1/home/shivali/R-Updated/R-3.0.2/lib/R/include -DNDEBUG  -I/gpfs1/home/shivali/shivali/libiconv-1.14/include -I/usr/lpp/X11/include/X11 -I/gpfs1/home/shivali/software/gettext-0.18/include -I/gpfs1/home/shivali/software/libpng-1.6.2/include -I/gpfs1/home/shivali/hdf5-1.8.12/include   -Ihdf5/src   -O -qstrict  -c HandleList.cpp -o HandleList.o
"HandleList.cpp", line 175.1: 1540-1101 (W) A return value of type "int" is expected.
xlC_r: 1501-230 (S) Internal compiler error; please contact your Service Representative. For more information visit:
make: 1254-004 The error code from the last command is 41.

ERROR: compilation failed for package 'rhdf5'
* removing '/gpfs1/home/shivali/R-Updated/R-3.0.2/lib/R/library/rhdf5'

 -- output of sessionInfo(): 

[ncmr0102][/gpfs1/home/shivali/R-Updated/R-3.0.2/bin]> R

R version 3.0.2 (2013-09-25) -- "Frisbee Sailing"
Copyright (C) 2013 The R Foundation for Statistical Computing
Platform: powerpc-ibm-aix5.3.0.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

s> essionInfo()
R version 3.0.2 (2013-09-25)
Platform: powerpc-ibm-aix5.3.0.0 (64-bit)

[1] en_US en_US en_US C en_US en_US

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

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