[BioC] DB PROBLEM

[Nicolas Delhomme]

Dear Abhishek,

Please be more precise in your question. Using the search functionality on the Bioconductor website I pointed you to offline already gives some - I believe - interesting results; see http://www.bioconductor.org/help/search/index.html?q=oryza

As to the output of sessionInfo(), please run the sessionInfo command in your R session. The output will look something like:

> sessionInfo()

R version 3.0.2 (2013-09-25)
Platform: x86_64-pc-linux-gnu (64-bit)

locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C         LC_TIME=C            LC_COLLATE=C         LC_MONETARY=C        LC_MESSAGES=C        LC_PAPER=C           LC_NAME=C            LC_ADDRESS=C       
[10] LC_TELEPHONE=C       LC_MEASUREMENT=C     LC_IDENTIFICATION=C 

attached base packages:
[1] parallel  stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] LSD_2.5                 ellipse_0.3-8           schoolmath_0.4          colorRamps_2.3          gtools_3.1.0            MASS_7.3-29             scatterplot3d_0.3-33    vsn_3.30.0             
[9] Biobase_2.22.0          RColorBrewer_1.0-5      DESeq2_1.2.1            RcppArmadillo_0.3.920.1 Rcpp_0.10.5             GenomicRanges_1.14.0    XVector_0.2.0           IRanges_1.20.0         
[17] BiocGenerics_0.8.0     

loaded via a namespace (and not attached):
[1] AnnotationDbi_1.24.0  BiocInstaller_1.12.0  DBI_0.2-7             RSQLite_0.11.4        XML_3.98-1.1          affy_1.40.0           affyio_1.30.0         annotate_1.40.0       genefilter_1.44.0    
[10] grid_3.0.2            lattice_0.20-24       limma_3.18.0          locfit_1.5-9.1        preprocessCore_1.24.0 splines_3.0.2         stats4_3.0.2          survival_2.37-4       tools_3.0.2          
[19] xtable_1.7-1          zlibbioc_1.8.0


---------------------------------------------------------------
Nicolas Delhomme

Genome Biology Computational Support

European Molecular Biology Laboratory

Tel: +49 6221 387 8310
Email: nicolas.delhomme at embl.de
Meyerhofstrasse 1 - Postfach 10.2209
69102 Heidelberg, Germany
---------------------------------------------------------------





On 11 Dec 2013, at 05:59, abhishek singh chauhan [guest] <guest at bioconductor.org> wrote:

> 
> How to make Oryza sativa genome database in R package. 
> 
> -- output of sessionInfo(): 
> 
> How to make Oryza sativa genome database in R package. 
> 
> --
> Sent via the guest posting facility at bioconductor.org.
> 
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---------------------------------------------------------------
Nicolas Delhomme

Nathaniel Street Lab
Department of Plant Physiology
Umeå Plant Science Center

Tel: +46 90 786 7989
Email: nicolas.delhomme at plantphys.umu.se
SLU - Umeå universitet
Umeå S-901 87 Sweden