[BioC] kmer and zscore calculation
fabrice.ciup at gmail.com
Wed Dec 18 18:38:21 CET 2013
Thank you for your reply.
For example, I have a sample fastq file.
I want to calculate 6kmers in this sample file. Also I have extract a
control fastq file.
The z-score was calculated for each pentamer as:
(occurrence in sequences – average occurrence in control sequences) /
standard deviation of occurrence in control sequences
On Wed, Dec 18, 2013 at 4:07 AM, Julian Gehring <julian.gehring at embl.de> wrote:
> Hi Fabrice,
> Could you give an example for this, especially on what the z-score
> statistics is about to tell you?
> Best wishes
> On 12/17/2013 07:28 PM, Fabrice Tourre wrote:
>> Dear list,
>> I have a list of bed regions. each region is 10bp length. I want to
>> calculate the hexamers and pentamers in theses regions and get the
>> zscore. Is there any existed packages to do this?
>> Thank you very much in advance.
>> Bioconductor mailing list
>> Bioconductor-0bNBQ1PAWB4BXFe83j6qeQ at public.gmane.org
>> Search the archives:
More information about the Bioconductor