[BioC] statistical test for time course data

Gordon K Smyth smyth at wehi.EDU.AU
Tue Feb 5 04:02:45 CET 2013


Dear Rich,

I have added a time course example using splines to the limma User's 
Guide, see page 48:

http://bioconductor.org/packages/2.12/bioc/vignettes/limma/inst/doc/usersguide.pdf

Best wishes
Gordon

------------------ original message ------------------
[BioC] statistical test for time course data
Richard Friedman friedman at cancercenter.columbia.edu
Sun Feb 3 20:18:03 CET 2013

Dear Gordon,

 	Thank you very much for the clarification. Now that I think of it, 
the one-against all is straightforward. However, If there are any worked 
examples you could point me towards for polynomial and spline modeling of 
the time series I would greatly appreciate it. I am especially interested 
in testing the hypothesis that the temporal behavior of 2 treatments are 
different.

Best wishes,
Rich

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