[BioC] rGADEM: e-Values for reported motifs
Alexandra Zerck
alexandra.zerck at microdiscovery.de
Tue Feb 5 11:21:36 CET 2013
Hello all,
I am using the rGADEM package to find motifs in a ChIP-Seq data set. Now
I want to rank the reported motifs based on their significance. Is there
a possibility to retrieve the e-Value for each motif? I can see that the
tool verbosely reports a fitness value that corresponds to log(e-Value),
however I didn't find a way to access it from the resulting gadem object.
Any suggestions?
Thanks,
Alexandra
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