[BioC] rGADEM: e-Values for reported motifs

Alexandra Zerck alexandra.zerck at microdiscovery.de
Tue Feb 5 11:21:36 CET 2013


Hello all,

I am using the rGADEM package to find motifs in a ChIP-Seq data set. Now 
I want to rank the reported motifs based on their significance. Is there 
a possibility to retrieve the e-Value for each motif? I can see that the 
tool verbosely reports a fitness value that corresponds to log(e-Value), 
however I didn't find a way to access it from the resulting gadem object.

Any suggestions?

Thanks,
Alexandra



More information about the Bioconductor mailing list