[BioC] statistical test for time course data

Gordon K Smyth smyth at wehi.EDU.AU
Wed Feb 6 00:02:46 CET 2013


> Date: Tue, 5 Feb 2013 07:23:32 +0100
> From: Davide Cittaro <cittaro.davide at hsr.it>
> To: Bioconductor mailing list <bioconductor at r-project.org>
> Subject: Re: [BioC] statistical test for time course data
>
>
> On Feb 5, 2013, at 4:02 AM, Gordon K Smyth <smyth at wehi.edu.au> wrote:
>
>> Dear Rich,
>>
>> I have added a time course example using splines to the limma User's
>> Guide, see page 48:
>>
>> http://bioconductor.org/packages/2.12/bioc/vignettes/limma/inst/doc/usersguide.pdf
>
>
> Does this work also for RNA-seq data?
>
> d

Yes.  The same approach works for edgeR glms with hardly any change.

Best wishes
Gordon

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