[BioC] VariantAnnotation package with snp location

Fabrice Tourre fabrice.ciup at gmail.com
Fri Feb 8 18:29:22 CET 2013


Dear list,

I am using VariantAnnotation package to annotated a list of snps. But
I only have the snp coordinate information. It seems VariantAnnotation
only works with VCF format. I am not family with VCF format.

How can I use VariantAnnotation with my snp list? It is not vcf format.


Thank you very much in advance.

Best wishes,



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