[BioC] problem with pd.huex.1.0.st.v2 and oligo::getProbeInfo

[Mikhail Pachkov]

Dear All,

I have got a strange problem. I try to get probe information
(particularly I am interested in fsetid, fid, atom) with getProbeInfo
function. Here is example:

library(oligo);
rawdata=read.celfiles("GSM529785.CEL.gz");
probeInfo <- getProbeInfo(rawdata, c('fid', 'fsetid', 'atom',
'transcript_cluster_id','exon_id'));

However it looks like instead of fsetid function returns transcript_cluster_id:

>probeInfo[1,]
  fid man_fsetid  fsetid    atom transcript_cluster_id   exon
1  15    3029030 3029030 5132751               3029030 444853

If I check directly underlying database
pd.huex.1.0.st.v2/extdata/pd.huex.1.0.st.v2.sqlite I can see that
function returned transcript_cluster_id instead of fsetid.

>select * from pmfeature where atom=5132751;
fid|fsetid      | atom     | x | y
15|3029044|5132751|14|0

sqlite> select * from featureSet where fsetid=3029044;
fsetid|strand|start|stop|transcript_cluster_id|exon_id|crosshyb_type|level|chrom|type
3029044|0|142991717|142991843|3029030|444853|1|1|9|1

Do I use wrong arguments for getProbeInfo? Is it bug?

Thank you in advance!

Best regards,

Mikhail Pachkov