[BioC] R crashes when using CDF package generated using makecdfenv

[Lars Rønn Olsen [guest]]

Dear Bioconductor/makecdfenv experts,

I am having issues using a cdf package compiled from a custom cdf file using makecdfenv. The code below works fine with other .cdf files, but when I compile a cdf package with the cdf file located here (https://dl.dropbox.com/u/2790735/test.cdf), R simply crashes when I attempt to run rma. Perhaps the cdf file is corrupt?

#Generating cdf package in R
library(makecdfenv)
make.cdf.package("test.cdf", species = "Homo_sapiens")

#Install in terminal
R CMD INSTALL testcdf

#Back in R, attempting to use cdf package
library(testcdf)
library(affy)
matrix <- ReadAffy()
matrix at cdfName = "testcdf"
matrix.rma <- rma(matrix)
#R crashes here (also on other comps)

I'm not sure if/what info from the Mac OSX problem report is relevant, so I uploaded it her (https://dl.dropbox.com/u/2790735/R_error_message.txt).

Any help is greatly appreciated!

Best regards,
Lars

 -- output of sessionInfo(): 

R version 2.15.2 (2012-10-26)
Platform: i386-apple-darwin9.8.0/i386 (32-bit)

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] testcdf_1.36.0       AnnotationDbi_1.20.3 affy_1.36.1          Biobase_2.18.0       BiocGenerics_0.4.0   makecdfenv_1.36.0   

loaded via a namespace (and not attached):
 [1] affyio_1.26.0         BiocInstaller_1.8.3   DBI_0.2-5             IRanges_1.16.5        parallel_2.15.2      
 [6] preprocessCore_1.20.0 RSQLite_0.11.2        stats4_2.15.2         tools_2.15.2          zlibbioc_1.4.0       


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