[BioC] illegal operand when I run DEXSeq
Ou, Jianhong
Jianhong.Ou at umassmed.edu
Wed Feb 27 22:40:59 CET 2013
Hi Steve,
Because R is crashed after I run the code, I can only show you my sessionInfo before that.
> sessionInfo()
R version 2.15.2 (2012-10-26)
Platform: x86_64-unknown-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=C LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] DEXSeq_1.4.0 Biobase_2.18.0 BiocGenerics_0.4.0
[4] BiocInstaller_1.8.3
loaded via a namespace (and not attached):
[1] biomaRt_2.14.0 hwriter_1.3 RCurl_1.95-3 statmod_1.4.16 stringr_0.6.2
[6] tools_2.15.2 XML_3.95-0.1
Yours sincerely,
Jianhong Ou
jianhong.ou at umassmed.edu
On Feb 27, 2013, at 4:32 PM, Steve Lianoglou wrote:
> Hi,
>
> On Wed, Feb 27, 2013 at 4:04 PM, Ou, Jianhong <Jianhong.Ou at umassmed.edu> wrote:
>> Hi All,
>>
>> I got illegal operation when I run DEXSeq.
>>
>> May I know the possible reasons for this error?
>
> Can you show the output of `sessionInfo()` after you load DEXSeq so we
> can see the package versions you are using?
>
> (also, please be more prudent in the size of the "log" you paste into
> the email you send to the list ... having a list of all of the genes
> in your study is a bit much ;-)
>
> -steve
> --
> Steve Lianoglou
> Graduate Student: Computational Systems Biology
> | Memorial Sloan-Kettering Cancer Center
> | Weill Medical College of Cornell University
> Contact Info: http://cbio.mskcc.org/~lianos/contact
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