[BioC] illegal operand when I run DEXSeq

Ou, Jianhong Jianhong.Ou at umassmed.edu
Wed Feb 27 22:40:59 CET 2013


Hi Steve,

Because R is crashed after I run the code, I can only show you my sessionInfo before that.

> sessionInfo()
R version 2.15.2 (2012-10-26)
Platform: x86_64-unknown-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=C                 LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] DEXSeq_1.4.0        Biobase_2.18.0      BiocGenerics_0.4.0 
[4] BiocInstaller_1.8.3

loaded via a namespace (and not attached):
[1] biomaRt_2.14.0 hwriter_1.3    RCurl_1.95-3   statmod_1.4.16 stringr_0.6.2 
[6] tools_2.15.2   XML_3.95-0.1  


Yours sincerely,

Jianhong Ou

jianhong.ou at umassmed.edu


On Feb 27, 2013, at 4:32 PM, Steve Lianoglou wrote:

> Hi,
> 
> On Wed, Feb 27, 2013 at 4:04 PM, Ou, Jianhong <Jianhong.Ou at umassmed.edu> wrote:
>> Hi All,
>> 
>> I got illegal operation when I run DEXSeq.
>> 
>> May I know the possible reasons for this error?
> 
> Can you show the output of `sessionInfo()` after you load DEXSeq so we
> can see the package versions you are using?
> 
> (also, please be more prudent in the size of the "log" you paste into
> the email you send to the list ... having a list of all of the genes
> in your study is a bit much ;-)
> 
> -steve
> -- 
> Steve Lianoglou
> Graduate Student: Computational Systems Biology
> | Memorial Sloan-Kettering Cancer Center
> | Weill Medical College of Cornell University
> Contact Info: http://cbio.mskcc.org/~lianos/contact



More information about the Bioconductor mailing list