[BioC] Visualization of alignments with mismatch bases

[Julian Gehring]

Hi,

Is there a good way to visualize aligned reads with mismatch bases 
(SNPs) along the genome (similar to what one knows from the standard 
genome browsers)?

'ggbio' came to my mind with which plotting a pile of reads is straight 
forward.  However, overlaying the mismatched bases for each reads seems 
not that easy any more.

Does someone of you have a good way to do this or found another solution 
that works for R/bioc?

Best wishes
Julian