[BioC] subset GRanges

Cook, Malcolm MEC at stowers.org
Thu Jan 10 16:38:11 CET 2013


Wim,

If you show us how you created you GRanges, what it looks like, how  exactly you've tried to " retrieve all ranges of one special chromosome", and what you expect the answer to be (i.e. as a GRanges), we will be well equipped to help.

Cheers,

~Malcolm


 .-----Original Message-----
 .From: bioconductor-bounces at r-project.org [mailto:bioconductor-bounces at r-project.org] On Behalf Of Wim Kreinen
 .Sent: Wednesday, January 09, 2013 2:24 PM
 .To: bioconductor at r-project.org
 .Subject: [BioC] subset GRanges
 .
 .Hello,
 .
 .I have a GRanges object gr comprising all (human) chromosomes. And now I
 .would like to retrieve all ranges of one special chromosome (e.g.
 .Chromosome 11). I dont find a way neither with window, subset or seqselect.
 .How does it work?
 .
 .Thanks
 .Wim
 .
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 .
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