[BioC] paper - download - pubmed

[Nooshin Omranian]

Hi Jim,

I know, but I sent to bioc if anybody in this list knows any bioc 
package which is helpful in my case.

Thanks,
Nooshin

On 1/15/2013 2:56 PM, James W. MacDonald wrote:
> Hi Nooshin,
>
> NCBI2R is a CRAN package, not BioC. You should either contact the 
> maintainer directly, or ask on R-help.
>
> Best,
>
> Jim
>
>
>
> On 1/15/2013 6:44 AM, Nooshin Omranian wrote:
>>
>> Hi,
>>
>> I actually need to download pdfs through R code. The thing which I 
>> want to do is that, search for a paper in pubmed, which is possible 
>> by using GetPubMed function in the package "NCBI2R’".
>>
>> GetPubMed(searchterm, file = "", download = TRUE , showurl = FALSE, 
>> xldiv =
>> ";", hyper = "HYPERLINK", MaxRet = 30000, sme = FALSE, smt = FALSE,
>> quiet = TRUE, batchsize=500,descHead=FALSE)
>>
>> With this function I can not download the pdfs for all hits, although 
>> if I go to the pubmed, I can download it.
>>
>> So, the problem is not that, for each paper I have to download the 
>> pdfs (which are available if I go to the pubmed and search directly 
>> there) and the corresponding supplementary files.
>>
>> Could anybody please help me how I can solve this?
>>
>> Thanks,
>> Nooshin
>>
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>