[BioC] VariantAnnotation: fine define Locating variants in and around genes

[Fabrice Tourre]

Dear list,

I am using VariantAnnotation to Locate variants in and around genes.

In VariantAnnotation, the region is defined as: Coding Variants,
IntronVariants, FiveUTRVariants, ThreeUTRVariants, IntergenicVariants,
SpliceSiteVariants or PromoterVariants.

If it possible to know whether a snp is in exon/intron within
transcription region but outside coding region?

Thanks.