[BioC] Flow Cytometry Analysis with FlowCore

Telma Fernandes [guest] guest at bioconductor.org
Wed Jul 3 13:10:52 CEST 2013


I wanna know how to do transformation of the channel four (FLH 4) without using the standard transformations offer by the flowCore package?

The values of the channel four are between 1 and 4096 and i need to convert in values between 1 and 246 with the rule 10^(x/1024).

Thank you.

 -- output of sessionInfo(): 

R version 2.15.1 (2012-06-22)
Platform: i386-pc-mingw32/i386 (32-bit)

locale:
[1] LC_COLLATE=Portuguese_Portugal.1252  LC_CTYPE=Portuguese_Portugal.1252    LC_MONETARY=Portuguese_Portugal.1252
[4] LC_NUMERIC=C                         LC_TIME=Portuguese_Portugal.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] latticeExtra_0.6-24 RColorBrewer_1.0-5  flowViz_1.22.0      lattice_0.20-15     flowCore_1.24.2    
 [6] rrcov_1.3-3         pcaPP_1.9-49        mvtnorm_0.9-9995    robustbase_0.9-8    Biobase_2.18.0     
[11] BiocGenerics_0.4.0 

loaded via a namespace (and not attached):
 [1] feature_1.2.8      graph_1.36.2       grid_2.15.1        hexbin_1.26.2      IDPmisc_1.1.17     KernSmooth_2.23-10
 [7] ks_1.8.12          MASS_7.3-23        stats4_2.15.1      tools_2.15.1      

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