[BioC] Error in clusterProfiler package with function \"setReadable<-\"

[Frederic Bertrand [guest]]

Greetings,

It seems that clusterProfiler no longer works with bioC 2.13, yet it works perfectly well for bioC 2.11 and 2.12.

Has anyone else got this issue ? It seems to be due to a failed method importation from package DOSE.
I am aware that this was an issue that was reported in the past but was corrected at least in bioC 2.11 and 2.12.

Here is the log of a minimal non working example (the package example itself).

R version 3.0.1 (2013-05-16) -- "Good Sport"
[..]

> library(clusterProfiler)
[..]

No methods found in "DOSE" for requests: setReadable<-

Example for groupGO function fails:
data(gcSample)
yy <- groupGO(gcSample[[1]], organism="human", ont="BP", level=2)
Loading required package: org.Hs.eg.db

Error in setReadable(x) <- readable : 
  could not find function "setReadable<-"

Thanks for your help,
Best regards,
Frederic Bertrand
Assistant professor
University of Strasbourg, France.


 -- output of sessionInfo(): 

> sessionInfo()
R version 3.0.1 (2013-05-16)
Platform: x86_64-w64-mingw32/x64 (64-bit)

locale:
[1] LC_COLLATE=French_France.1252  LC_CTYPE=French_France.1252   
[3] LC_MONETARY=French_France.1252 LC_NUMERIC=C                  
[5] LC_TIME=French_France.1252    

attached base packages:
[1] parallel  stats     graphics  grDevices utils     datasets  methods  
[8] base     

other attached packages:
[1] org.Hs.eg.db_2.9.0    clusterProfiler_1.9.1 AnnotationDbi_1.23.16
[4] Biobase_2.21.6        BiocGenerics_0.7.2    RSQLite_0.11.4       
[7] DBI_0.2-7             ggplot2_0.9.3.1      

loaded via a namespace (and not attached):
 [1] colorspace_1.2-2   dichromat_2.0-0    digest_0.6.3       DO.db_2.6.0       
 [5] DOSE_1.99.1        GO.db_2.9.0        GOSemSim_1.19.1    grid_3.0.1        
 [9] gtable_0.1.2       igraph_0.6.5-2     IRanges_1.19.15    KEGG.db_2.9.1     
[13] labeling_0.2       MASS_7.3-26        munsell_0.4        plyr_1.8          
[17] proto_0.3-10       qvalue_1.35.0      RColorBrewer_1.0-5 reshape2_1.2.2    
[21] scales_0.2.3       stats4_3.0.1       stringr_0.6.2      tcltk_3.0.1       
[25] tools_3.0.1       
> 

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