[BioC] Error converting SBML to graph Object using R SBML

Dan Tenenbaum dtenenba at fhcrc.org
Tue Jul 30 19:06:51 CEST 2013


On Mon, Jul 29, 2013 at 11:50 AM, Robin Philip <Robin.Philip at agios.com> wrote:
> Hello,
>
> I am trying to convert an SBML model to a graph object in R.
> The following are the commands I use to do so.
>
> doc<-rsbml_read(system.file('sbml','RAW264_7_v2.xml',package='rsbml'),dom=FALSE)
> g<-rsbml_graph(doc)
>
> I get the following error in the last line
> Error in gNodes[x$edges] : invalid subscript type 'list'
>
> Can someone suggest a remedy?
>


Please send the output of the sessionInfo() command.
I don't see the file RAW264_7_v2.xml in either the release or devel
version of rsbml.

Dan


> Regards
> Robin Philip
>
> This message contains information which may be confident...{{dropped:11}}
>
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