[BioC] RS-DBI driver error with org.Sc.sgd.db

[Robert Castelo]

hi,

while i was using the gene-centric organism-level package for yeast 
org.Sc.sgd.db i encountered the following error:

library(org.Sc.sgd.db)

select(org.Sc.sgd.db, cols="ORF", keys=keys(org.Sc.sgd.db, 
keytype="GENENAME"), keytype="GENENAME")
Error in sqliteExecStatement(con, statement, bind.data) :
   RS-DBI driver: (error in statement: near "IMP3": syntax error)

it looks like the sqlite engine does not like some symbol name in 
"GENENAME".


cheers,

robert.
ps: sessionInfo()
R version 3.0.0 (2013-04-03)
Platform: x86_64-unknown-linux-gnu (64-bit)

locale:
  [1] LC_CTYPE=en_US.UTF8       LC_NUMERIC=C 
LC_TIME=en_US.UTF8        LC_COLLATE=en_US.UTF8
  [5] LC_MONETARY=en_US.UTF8    LC_MESSAGES=en_US.UTF8    LC_PAPER=C 
             LC_NAME=C
  [9] LC_ADDRESS=C              LC_TELEPHONE=C 
LC_MEASUREMENT=en_US.UTF8 LC_IDENTIFICATION=C

attached base packages:
[1] parallel  stats     graphics  grDevices utils     datasets  methods 
   base

other attached packages:
[1] org.Sc.sgd.db_2.9.1  RSQLite_0.11.4       DBI_0.2-7 
AnnotationDbi_1.22.5 Biobase_2.20.0
[6] BiocGenerics_0.6.0   vimcom_0.9-8         setwidth_1.0-3 
colorout_1.0-0

loaded via a namespace (and not attached):
[1] IRanges_1.18.1 stats4_3.0.0