[BioC] Rat St gene array 2.0

James W. MacDonald jmacdon at uw.edu
Wed Jun 12 21:09:42 CEST 2013

Hi Yongde,

You will want to be using R-3.0.1 and either the oligo or xps package. 
If you use oligo, then you will automatically get all but the annotation 
.db file downloaded automatically.

Depending on the way you summarize the probesets (at the transcript or 
exon level), you will then want either the 
ragene20sttranscriptcluster.db or ragene20stprobeset.db packages, both 
of which can be installed using biocLite().



On 6/12/2013 1:36 PM, YBao wrote:
> Hi All,
> I wonder if anyone could point to me where to find the axillary files, such
> as .db, .cdf, .probe etc, for Affy's rat st gene array 2.0.
> Best,
> Yongde

James W. MacDonald, M.S.
University of Washington
Environmental and Occupational Health Sciences
4225 Roosevelt Way NE, # 100
Seattle WA 98105-6099

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