[BioC] metabolite to gene - mapping

[Marc Carlson]

One more thing:

It might also be worth your time to have a look at the KEGGREST package 
(currently it's in devel).

http://www.bioconductor.org/packages/2.12/bioc/html/KEGGREST.html


   Marc


On 03/20/2013 12:38 PM, Marc Carlson wrote:
> Hi Richard,
>
> The Reactome.db package contains the entire reactome database.  It is 
> not all exposed via select (on account of the fact that reactome is so 
> enormous).  But by using the DBI and RSQLite packages, along with the 
> included database connection, you should be able to get out anything 
> from there that you wanted to extract.
>
> And if you are willing to help me find the thing you wish to expose 
> (the reactome database schema is quite complex), I can probably help 
> you make it accessible via select.
>
>
>   Marc
>
>
>
> On 03/14/2013 12:06 PM, Richard Friedman wrote:
>> On Mar 14, 2013, at 3:04 PM, n omranian wrote:
>>
>>> Dear Rich,
>>> Thanks a lot for your reply. I will check it and inform you about 
>>> the result. but nothing exists in R?
>>> Thanks.
>>> Nooshin
>>>
>> Not of which I am aware but maybe someone else on the list knows.
>> Rich
>>
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