[BioC] rGADEM crash

[Dan Tenenbaum]

Hi,


On Wed, Mar 27, 2013 at 1:53 PM, Lakshmanan Iyer <liyer01 at tufts.edu> wrote:
> I am trying to rGADEM on a few sequences in FASTA format and it
> crashes with the following error:
>
>> gadem <- GADEM (Sequences, verbose=1)

Can you send the commands or data necessary to generate the Sequences
object you are passing to GADEM()?
Dan



> *** Start C Programm ***
> bit calloc failed!
>
> Any help appreciated!
>> sessionInfo()
> R version 2.15.0 (2012-03-30)
> Platform: x86_64-pc-linux-gnu (64-bit)
>
> locale:
>  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
>  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
>  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
>  [7] LC_PAPER=C                 LC_NAME=C
>  [9] LC_ADDRESS=C               LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] grid      stats     graphics  grDevices utils     datasets  methods
> [8] base
>
> other attached packages:
> [1] rGADEM_2.6.0         seqLogo_1.24.0       BSgenome_1.26.1
> [4] GenomicRanges_1.10.7 Biostrings_2.26.3    IRanges_1.16.6
> [7] BiocGenerics_0.4.0
>
> loaded via a namespace (and not attached):
> [1] parallel_2.15.0 stats4_2.15.0
>
> -best
> -Lax
>
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