[BioC] How to analyze Agilent DNA Methylation Microarray Analysis

[Arpit Jain [guest]]

Hi,

I have 18 samples (2 Normal, 16 Cancer data sets) obtained using Agilent DNA Methylation Microarrays. The data sets are obtained in .txt format from Aglilent Feature Extraction software.
I want to find the differentially methylated regions/genes in the sample data. 
The packages in Bioconductor support data from Illumina Methylation.

How should I proceed with the work?? I also need to perform pathway analysis and clustering differentially methylated miRNAs.

Hope for a positive reply.

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