[BioC] rsbml installation fails on MacOS with libsbml 3

[Hannes Hettling [guest]]

Dear all,

we have a problem with installing rsbml on MacOS using libsbml 3.4.1.  

The error message (pasted below) is similar to the one in an older post:
http://article.gmane.org/gmane.science.biology.informatics.conductor/33187/match=rsbml

Error : .onLoad failed in loadNamespace() for 'rsbml', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/Library/Frameworks/R.framework/Versions/2.15/Resources/library/rsbml/libs/x86_64/rsbml.so':
  dlopen(/Library/Frameworks/R.framework/Versions/2.15/Resources/library/rsbml/libs/x86_64/rsbml.so, 6): Symbol not found: _ASTNode_addChild
  Referenced from: /Library/Frameworks/R.framework/Versions/2.15/Resources/library/rsbml/libs/x86_64/rsbml.so
  Expected in: dynamic lookup

We set the environment variables LIBSBML3_CFLAGS=/usr/local/lib/ and LIBSBML3_LIBS=/usr/local/include/ and the directories contain the library files and the headers, respectively. 

Unfortunately, we are not able to build the package from source, since we cannot get access to Xcode (development tools) on that machine. 

With which sbml version was the current macos rsbml package compiled?

Hope someone can help us,
many thanks in advance,

Farah and Hannes


 -- output of sessionInfo(): 

R version 2.15.1 (2012-06-22)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)

locale:
[1] C/UTF-8/C/C/C/C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] BiocGenerics_0.4.0  BiocInstaller_1.8.3

loaded via a namespace (and not attached):
[1] graph_1.36.2  stats4_2.15.1 tools_2.15.1 

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