[BioC] Plugins in ensemblVEP

[Valerie Obenchain]

The --plugin argument is implemented in ensemblVEP 1.1.3. I've also 
added support for the caching options.

How are the new rownames from readVcf() working out? Any further 
problems with the VCFRowID?

Valerie

On 05/07/2013 11:31 AM, Thomas Sandmann [guest] wrote:
> Hi Valerie,
>
> is there a way to specify the "--plugin" argument for varianteffectpredictor.pl via the VEPParam function ? If not, would it be possible to add it ?
>
> I am referring to plugins as described here:
> http://uswest.ensembl.org/info/docs/variation/vep/vep_script.html#plugins
>
> Thanks a lot !
> Thomas
>
>   -- output of sessionInfo():
>
> NA
>
> --
> Sent via the guest posting facility at bioconductor.org.
>