[BioC] Isobar module

Dan Tenenbaum dtenenba at fhcrc.org
Tue Nov 5 19:52:55 CET 2013



----- Original Message -----
> From: "Trinidad Martín Campos" <trinidadmartinc at gmail.com>
> To: "Dan Tenenbaum" <dtenenba at fhcrc.org>
> Cc: bioconductor at r-project.org
> Sent: Tuesday, November 5, 2013 10:50:54 AM
> Subject: Re: [BioC] Isobar module
> 
> 
> Hello
> 
> 
> I already tried with it and the output is: I am using R 2.10.1 and
> BioC 2.5
> 
> 
> Warning in install.packages(pkgs = pkgs, repos = repos, ...) :
> argument 'lib' is missing: using '/usr/local/lib/R/site-library'
> Warning message: In getDependencies(pkgs, dependencies, available,
> lib) : package ‘isobar’ is not available
> 

isobar was introduced in BioC 2.9, meaning you need to be running R-2.14 or later in order to use it.
We recommend using the latest release versions (BioC 2.13 and R 3.0.2).

Dan


> 
> 
> Thanks a lot!!!
> Best,
> Trini
> 
> 
> 
> 2013/11/5 Dan Tenenbaum < dtenenba at fhcrc.org >
> 
> 
> 
> 
> 
> 
> ----- Original Message -----
> > From: "Trinidad Martín Campos" < trinidadmartinc at gmail.com >
> > To: bioconductor at r-project.org
> > Sent: Tuesday, November 5, 2013 3:55:08 AM
> > Subject: [BioC] Isobar module
> > 
> > Good afternoon,
> > 
> > I am trying to install isobar via Bioconductor and I got this
> > message:
> > 
> > Warning message:
> > In getDependencies(pkgs, dependencies, available, lib) :
> > package ‘isobar’ is not available
> > 
> > I checked the website and I saw it is available for Linux as well
> > so
> > I dont
> > know where is the problem, can you help me please??
> > 
> > Thanks a lot
> > 
> 
> Try and install it as follows:
> 
> source(" http://bioconductor.org/biocLite.R ")
> biocLite("isobar")
> 
> If that does not work, please send the output of sessionInfo() to
> this list. You may be using a version of R/Bioconductor that is too
> old to support the isobar package.
> 
> Dan
> 
> 
> > Trinidad
> > 
> > [[alternative HTML version deleted]]
> > 
> > 
> > _______________________________________________
> > Bioconductor mailing list
> > Bioconductor at r-project.org
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> > Search the archives:
> > http://news.gmane.org/gmane.science.biology.informatics.conductor
> 
> 



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