[BioC] Finding Candidate Binding Sites for multiple Known Transcription Factors simultaneously

Hervé Pagès hpages at fhcrc.org
Tue Oct 1 21:01:15 CEST 2013

Hi Nazia,

On 09/18/2013 10:04 PM, Nazia Ahmad [guest] wrote:
> Hello sir
> I want to search binding sites for multiple TFs simultaneously from a set of sequences.Can N() work for it.If yes then how?If no then kindly suggest me any other way to do this.

If by "simultaneously" you mean you want to be able to match more than
one Position Weight Matrix to the genome at a time, then no, matchPWM()
doesn't support this. It can only match one PWM at a time.
To match multiple PWMs, just use a loop.


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> none
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Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
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