[BioC] looking for data file for ATH1 (GPL198)

Matthew McCall mccallm at gmail.com
Fri Oct 4 23:11:47 CEST 2013


Unfortunately there isn't currently an fRMA implementation for ATH1.
It is on the to-do list, but as you might imagine, that list is very
long. You could create your own implementation using the frmaTools
package described in:
McCall MN* and Irizarry RA (2011). Thawing Frozen Robust Multi-array
Analysis (fRMA), BMC Bioinformatics, 12:369.


On Fri, Oct 4, 2013 at 12:32 PM, Loraine, Ann <Ann.Loraine at uncc.edu> wrote:
> Hello,
> I would like to use fRMA to process data from the ATH1 (GPL198) microarray
> from Affymetrix.
> Is there a data file I can use for that array – e.g., something like
> hgu133afrmavecs but for the GPL198/ATH1 platform?
> If yes, what is it called and how do I load it?
> Thank you and best wishes,
> Ann Loraine
> -------------------------------
> Ann Loraine, Ph.D.
> Associate Professor
> Department of Bioinformatics and Genomics
> University of North Carolina at Charlotte
> North Carolina Research Campus
> 600 Laureate Way
> Kannapolis, NC 28081
> 704-250-5750
> aloraine at uncc.edu
> http://www.transvar.org
> http://www.bioviz.org
> http://www.uncc.edu

Matthew N McCall, PhD
112 Arvine Heights
Rochester, NY 14611
Cell: 202-222-5880

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