[BioC] R 3.0.0 problems installing flowCore and other packages

[Dan Tenenbaum]

Hi Sisi,

----- Original Message -----
> From: "Sisi Chen [guest]" <guest at bioconductor.org>
> To: bioconductor at r-project.org, sisichen at berkeley.edu
> Sent: Friday, October 4, 2013 8:36:48 PM
> Subject: [BioC] R 3.0.0 problems installing flowCore and other packages
> 
> 
> Hi there,
> 
> I recently upgraded my version of R to 3.0.2 because I was having
> trouble installing packages. But now I can't install any of the main
> flowcytometry packages: flowCore, flowQ, flowStats, flowViz etc
> using bioclite().
> 
> Some of the dependencies seem to download incompletely and also the
> packages don't attach automatically. Is anyone else having this
> problem?
> 

Can you please post the complete output of the biocLite() and library() commands you tried?

Dan


> ~Sisi Chen
> UC-Berkeley
> 
>  -- output of sessionInfo():
> 
> 
> R version 3.0.0 (2013-04-03)
> Platform: x86_64-apple-darwin10.8.0 (64-bit)
> 
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
> 
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
> 
> loaded via a namespace (and not attached):
> [1] tools_3.0.0
> 
> --
> Sent via the guest posting facility at bioconductor.org.
> 
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