[BioC] Setting weight to agilent source
Kaj Chokeshaiusaha [guest]
guest at bioconductor.org
Sun Oct 13 07:18:07 CEST 2013
Dear R helpers,
I'm very new to Agilent analysis and still on my self-learning the usage of 'limma'. I would like to apologize everyone if my question is too naive to be asked.
I have read 'Using of Limma'. In the topic "4.7 Image-derived Spot Quality Weights", there are examples of setting weights to genepix and spot sources provided.
According to my zero experience, I do have no idea how to do this properly with files of 'agilent' source.
Would you please recommend me some 'should be done' settings? I really need suggestions from experienced people at this step.
-- output of sessionInfo():
R version 2.15.3 (2013-03-01)
Platform: x86_64-w64-mingw32/x64 (64-bit)
 LC_COLLATE=Thai_Thailand.874 LC_CTYPE=Thai_Thailand.874
 LC_MONETARY=Thai_Thailand.874 LC_NUMERIC=C
attached base packages:
 stats graphics grDevices utils datasets methods base
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