[BioC] Ensembl or Gencode version of TxDb.Hsapiens.UCSC.hg19.knownGene

Sean Davis sdavis2 at mail.nih.gov
Fri Oct 18 18:39:59 CEST 2013

On Fri, Oct 18, 2013 at 12:37 PM, Adaikalavan Ramasamy
<adaikalavan.ramasamy at gmail.com> wrote:
> Dear James,
> Thank you. This works brilliantly. However it now returns ENSG ids
> (previously entrez IDs).
> When I try to map these into gene symbols using og.Hs.egENSEMBL, about 20%
> of ENSG ids are not found. Should I use another database/package to do this
> conversion?

Hi, Adai.

You might consider using the biomaRt package. ; )


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