[BioC] getting RPKM or TPM values

Steve Lianoglou lianoglou.steve at gene.com
Thu Oct 31 18:57:35 CET 2013

Hi Nick,

On Thu, Oct 31, 2013 at 9:17 AM, Nikolay N. <nikolay12 at gmail.com> wrote:
> Hi,
> I would like to get RPKM or TPM values for a rna-seq study. How can I get
> in the most straight-forward way from a DGEList object in edgeR?
> Alternatively, if you are aware of another R package which makes it easy to
> get these values - please let me know.

Read through the documentation for the edgeR::cpm function:

R> ?cpm


Steve Lianoglou
Computational Biologist
Bioinformatics and Computational Biology

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