[BioC] Unable to load xps

Jorge Melendez [guest] guest at bioconductor.org
Tue Sep 10 17:04:27 CEST 2013


Hi!
As someone else on the list, I am having trouble loading xps in a mac. I am using OSX 10.8, R 3.0.1.  I used the latest precompiled binary and installed root at ~/my_rnaseq_exp/root. I changed my .bash_profile with
export ROOTSYS=/Users/jorgemelendez/my_rnaseq_exp/root
export PATH=$ROOTSYS/bin:$PATH
export LD_LIBRARY_PATH=$ROOTSYS/lib:$LD_LIBRARY_PATH
export DYLD_LIBRARY_PATH=$ROOTSYS/lib:$DYLD_LIBRARY_PATH
Root root runs fine, but when trying to load xps in R:

Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/Library/Frameworks/R.framework/Versions/3.0/Resources/library/xps/libs/xps.so':
  dlopen(/Library/Frameworks/R.framework/Versions/3.0/Resources/library/xps/libs/xps.so, 6): Library not loaded: @rpath/libGui.so
  Referenced from: /Library/Frameworks/R.framework/Versions/3.0/Resources/library/xps/libs/xps.so
  Reason: image not found
Error: package or namespace load failed for ‘xps’

Can you help?
Thanks a lot

 -- output of sessionInfo(): 

R version 3.0.1 (2013-05-16)
Platform: x86_64-apple-darwin10.8.0 (64-bit)

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
[1] tools_3.0.1

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