[BioC] pathview question

[Luo Weijun]

Joe,
Pathview take data in any scale, either relative or absolute levels. But you need to make sure the limit argument is properly set. Pathview doesn’t do time-course or multi-state/sample in the same graph at this time. you can generate one graph for each sample. It will plot time-course or multi-state/sample in one graph soon in next version.
HTH,
Weijun 


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On Wed, 9/11/13, joseph.houjue wrote:


 Hey Weijun,
  
 I have a question about data format. The input
 data should be 
 normalized intensity or log normalized intensity  or
 FoldChange?  and 
 the value is mean of each group? or individual sample?
 If I have time-course data, how could I present
 multi-time points in one 
 map? 
  
 Thanks,
 Joe