[BioC] Query

Steve Lianoglou lianoglou.steve at gene.com
Tue Apr 1 08:38:12 CEST 2014


On Mon, Mar 31, 2014 at 10:49 PM, swathi mutyam
<swathimutyam91 at gmail.com> wrote:
> Hello,
>         Can you please explain what the data should be taken using
> Differential expression using LIMMA Package.

You will have to provide a more detailed question if you want a
reasonable answer.

limma was originally designed to assess differential gene expression
from microarray experiments. If you read through the limma user's
guide, you should get a pretty good idea of the types of data


The limma::voom function also allows you to perform differential gene
expression analysis from sequencing data.

If reading this plus reading through the user's guide that I linked to
above doesn't answer your question, please be more specific in your
follow up correspondences on this list, as it's not quite clear what
you are asking.



Steve Lianoglou
Computational Biologist

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