[BioC] oligo annotation: pd.mogene.2.0.st vs pd.mogene.2.0.st.v1
Bernd Klaus
bernd.klaus at embl.de
Thu Apr 3 10:54:08 CEST 2014
Dear Jim, Dear Bioconductors,
Jim, thanks a lot for providing the nice annotation packages
for oligo!
I have some mogene.2.0 microarray data and the cel files contain
"MoGene-2_0-st-v1.1sq"
as the chip identifier.
So If I try to read them in using
rawData <- read.celfiles(< list of celfiles > )
then oligo tries to download the "pd.mogene.2.0.st.v1"
package, which does not exist.
Can I just use
rawData <- read.celfiles(< list of celfiles >, pkgname = "pd.mogene.2.0.st" ) ?
After all it seems to be the same chip.
What does the v1 mean anyway?
Browsing the affymetrix website a bit seems to show that whenever you're looking
at some technical documentation, it is called MoGene-2_0-st-v1, while in the datasheet
pdf the v1 is left out …
Thanks a lot for your help!
Bernd
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