[BioC] GOSemSim with mgoSim results changed based on the order of input GO terms
Matt McNeill [guest]
guest at bioconductor.org
Fri Apr 11 16:59:24 CEST 2014
Is this expected behavior for mgoSim?
I am attempting to compare two lists GO terms. Each list was generated in a different species. Thus, I am using the "Wang" method and averaging the results using BMA. I noticed that if the GO term list is re-ordered, then the value in the thousandths decimal place changes (0.00X). I have tried several iterations of this now with the same result.
Thanks for any insight you can provide.
-- output of sessionInfo():
R version 3.0.2 (2013-09-25)
Platform: x86_64-unknown-linux-gnu (64-bit)
attached base packages:
 parallel stats graphics grDevices utils datasets methods
other attached packages:
 GOSemSim_1.20.3 AnnotationDbi_1.24.0 Biobase_2.22.0
 BiocGenerics_0.8.0 RSQLite_0.11.4 DBI_0.2-7
loaded via a namespace (and not attached):
 GO.db_2.10.1 IRanges_1.20.7 stats4_3.0.2
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