[BioC] Rgraphviz compilation error

Venkat Seshan [guest] guest at bioconductor.org
Tue Apr 15 19:12:46 CEST 2014

When updating to Bioconductor 2.14 I get the following error from Rgraphviz.

In file included from LL_funcs.c:1:0:
common.h:16:17: fatal error: gvc.h: No such file or directory
compilation terminated.
make: *** [LL_funcs.o] Error 1
ERROR: compilation failed for package ‘Rgraphviz’

The server runs Ubuntu 12.04 (LTS) and the necessary packages are available:

ii  graphviz                         2.26.3-10ubuntu1.1                rich set of graph drawing tools
ii  graphviz-dev                     2.26.3-10ubuntu1.1                transitional package for graphviz-dev rename
ii  libgraphviz-dev                  2.26.3-10ubuntu1.1                graphviz libs and headers against which to build applications

All the other packages were successfully updated.


 -- output of sessionInfo(): 

> sessionInfo()
R version 3.1.0 (2014-04-10)
Platform: x86_64-pc-linux-gnu (64-bit)

 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] BiocInstaller_1.14.1

loaded via a namespace (and not attached):
[1] tools_3.1.0

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