[BioC] problem with \"readCufflinks\"

Peng [guest] guest at bioconductor.org
Mon Apr 21 06:30:56 CEST 2014

I have used cummeRbund a bit recently with Cuffdiff outputs from runs on Galaxy. It has worked ok but the last few days it does not. I have tried to install the package again but no success. Please see below for my problems, the function "readCufflilnks" does not work, know why? Many thanks!

R 3.0.1

 -- output of sessionInfo(): 

> cuff_data<-readCufflinks('D:\\AAA-Peng Zhou\\R-3.0.1\\library\\AAAAAA')
Error: could not find function "readCufflinks"
> biocLite("readCufflinks")
BioC_mirror: http://bioconductor.org
Using Bioconductor version 2.12 (BiocInstaller 1.10.4), R version 3.0.1.
Installing package(s) 'readCufflinks'
Warning message:
package ‘readCufflinks’ is not available (for R version 3.0.1)

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