[BioC] total count filter cutoff
mahnaz Kiani [guest]
guest at bioconductor.org
Wed Apr 30 20:29:28 CEST 2014
I'm using edgeR for analysis of may data and I'm not sure what total count filter value cutoff value I should use, My reads are paired 50bP reads and total reads per sample is about 80,000,000. I tried cutoff values of 5,10,15,30,50 and 100 and I only saw differences between 50 and 100 but still looking for logical reason to chose the cutoff value.
Appreciate your help,
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