[BioC] chip removal from lumiBatch object

Kilo Morkowi kilo.morkowi at yandex.ru
Fri Aug 1 00:09:05 CEST 2014


I wil be very grateful if you could advise me on how can I correctly  remove an outlier chip from llumiBatch object. 

For instance, let's assume that B01 sample in lumiBarnes example is an outlier. I'd like to remove it before normalization.

How can this be done? Is here a method for deleting a chip?

Many thanks for your help,
--- Anastasia 

I have imported data with lumiR function, added control info, modified phenoData, and made QC and plots.

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