[BioC] R package not available for R v3.1.1

[Sean Davis]

Please install packages using biocLite as I suggested below and as
instructed on the Bioconductor website.

Sean
On Aug 20, 2014 9:16 PM, "JingXian Teo" <jing_xian90 at hotmail.com> wrote:

> Hi Sir,
>
> Sorry for the late reply. This is the installation process for wateRmelon
> and also IlluminaHuman Methylation450k.
>
> > install.packages("wateRmelon")
> Installing package into ‘/usr/local/lib/R/site-library’
> (as ‘lib’ is unspecified)
> --- Please select a CRAN mirror for use in this session ---
> Warning message:
> package ‘wateRmelon’ is not available (for R version 3.1.1)
>
>
> >install.packages("IlluminaHumanMethylation450k")
> Installing package into ‘/usr/local/lib/R/site-library’
> (as ‘lib’ is unspecified)
> Warning message:
> package ‘IlluminaHumanMethylation450k’ is not available (for R version
> 3.1.1)
>
> This is the sessionInfo():
>
> > sessionInfo()
> R version 3.1.1 (2014-07-10)
> Platform: x86_64-pc-linux-gnu (64-bit)
>
> locale:
>  [1] LC_CTYPE=en_SG.UTF-8       LC_NUMERIC=C
>  [3] LC_TIME=en_SG.UTF-8        LC_COLLATE=en_SG.UTF-8
>  [5] LC_MONETARY=en_SG.UTF-8    LC_MESSAGES=en_SG.UTF-8
>  [7] LC_PAPER=en_SG.UTF-8       LC_NAME=C
>  [9] LC_ADDRESS=C               LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_SG.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> loaded via a namespace (and not attached):
> [1] tcltk_3.1.1 tools_3.1.1
>
> Thank you for your help.
>
> Best regards,
> JingXian
>
>
>
>
> ------------------------------
> Date: Mon, 18 Aug 2014 06:16:28 -0400
> Subject: Re: [BioC] R package not available for R v3.1.1
> From: sdavis2 at mail.nih.gov
> To: jing_xian90 at hotmail.com; bioconductor at r-project.org
>
> Hi, JingXian.
>
>
>
>
> On Sun, Aug 17, 2014 at 9:49 PM, JingXian Teo <jing_xian90 at hotmail.com>
> wrote:
>
> Hi,
>
> Thank you for your reply.
>
> I get warning messages when installing wateRmelon package.
>
> Error:
>
> Warning messages:
> 1: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
>   installation of package ‘IlluminaHumanMethylation450k.db’ had non-zero
> exit status
> 2: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
>   installation of package ‘wateRmelon’ had non-zero exit status
>
>
> Hi, JingXian.
>
> Paste into the email the entire output of the installation process (the
> actual error message is there) and the output of sessionInfo().
>
> Sean
>
>
>
>
> regards,
> JingXian
>
>
>
> ------------------------------
> Date: Sun, 17 Aug 2014 21:26:02 -0400
> Subject: Re: [BioC] R package not available for R v3.1.1
> From: sdavis2 at mail.nih.gov
> To: guest at bioconductor.org
> CC: bioconductor at r-project.org; jing_xian90 at hotmail.com;
> Leonard.Schalkwyk at kcl.ac.uk
>
> Did you install using:
>
> source("http://bioconductor.org/biocLite.R")
> biocLite("wateRmelon")
>
>
> If so and you still get an error, be sure to include the output of
> sessionInfo().
>
> Sean
>
>
> On Sun, Aug 17, 2014 at 9:10 PM, CSI [guest] <guest at bioconductor.org>
> wrote:
>
> I am currently using R v3.1.1. I want to install "wateRmelon" R package
> but it is not available for R version 3.1.1.
>
>  -- output of sessionInfo():
>
> Installing package into ‘/usr/local/lib/R/site-library’
> (as ‘lib’ is unspecified)
> Warning message:
> package ‘wateRmelon’ is not available (for R version 3.1.1)
>
>
> --
> Sent via the guest posting facility at bioconductor.org.
>
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