[BioC] genefilter installation error

[BEN HAMDA Cherif]

Hi Subinoy,

Tap this line in consol

sudo apt-get install libcurl4-openssl-dev libxml2-dev

And this in R
install.packages("RCurl")
install.packages("XML")

After that :

source("http://bioconductor.org/biocLite.R")
biocLite("genefilter")

Tell me if it works

Best
Cherif
Le 24 août 2014 06:33, "Subinoy Biswas" <suny.bio at gmail.com> a écrit :

> Please help me I am getting error while installing  genefilter package
> ** help
> *** installing help indices
> ** building package indices
> ** installing vignettes
> ** testing if installed package can be loaded
> * DONE (AnnotationDbi)
> ERROR: dependency ‘XML’ is not available for package ‘annotate’
> * removing ‘/home/subinoy/R/x86_64-pc-linux-gnu-library/3.1/annotate’
> ERROR: dependency ‘annotate’ is not available for package ‘genefilter’
> * removing ‘/home/subinoy/R/x86_64-pc-linux-gnu-library/3.1/genefilter’
>
> The downloaded source packages are in
> ‘/tmp/RtmpFu8HQT/downloaded_packages’
> Warning messages:
> 1: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
>   installation of package ‘XML’ had non-zero exit status
> 2: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
>   installation of package ‘annotate’ had non-zero exit status
> 3: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
>   installation of package ‘genefilter’ had non-zero exit status
> 4: installed directory not writable, cannot update packages 'codetools',
> 'MASS', 'spatial'
> > library(genefilter)
>
> Error in library(genefilter) : there is no package called ‘genefilter’
>
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>
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