[BioC] Updating issues

Kyle Lambert [guest] guest at bioconductor.org
Mon Feb 3 07:59:09 CET 2014


I have been investigating how to update DESeq2 to version 1.3.35. When I entered: 
>source("http://bioconductor.org/biocLite.R") 
>biocLite("DESeq2")
My DESeq2 updated to 1.2.9.
I read that in order to get 1.3.35 bioconductor has to be updated from 2.13 to 2.14. However, it seems the current release of bioconductor is 2.13, and 2.14 is still being developed. Is Bioconductor version 2.14 unavailable for use right now? And is my information correct or is there a way to update DESeq2 to version 1.3.35?

 -- output of sessionInfo(): 

> sessionInfo()
R version 3.0.2 (2013-09-25)
Platform: x86_64-w64-mingw32/x64 (64-bit)

locale:
[1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United States.1252   
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C                          
[5] LC_TIME=English_United States.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
[1] tools_3.0.2

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