[BioC] Failure to Install Organism Package from AnnotationForge

[Joseph Shaw [guest]]

Hi all,

I am currently trying to install an organism package built using the makeOrgPackageFromNCBI() function from the AnnotationForge Package.

Unfortunately, when I attempt to install the package, I get an error informing me that, whilst AnnotationDbi 1.24.0 was found, the organism package requires >= AnnotationDbi 1.25.2.

> install.packages("*organism_package_name*", repos = NULL, type = "source")
* installing *source* package ‘*organism_package_name*’ ...
** R
** inst
** preparing package for lazy loading
Error : package ‘AnnotationDbi’ 1.24.0 was found, but >= 1.25.2 is required by ‘*organism_package_name*’
ERROR: lazy loading failed for package ‘*organism_package_name*’
* removing ‘/
Warning message:
In install.packages("*organism_package_name*", repos = NULL,  :
  installation of package ‘*organism_package_name*’ had non-zero exit status

According to the AnnotationDbi page on Bioconductor, 1.24.0 is the current release version. I have tried to reinstall the AnnotationDbi package, but I get the same error.

How can I update to the required AnnotationDbi version?

Joseph

 -- output of sessionInfo(): 

> sessionInfo()
R version 3.0.2 (2013-09-25)
Platform: x86_64-apple-darwin10.8.0 (64-bit)

locale:
[1] en_IE.UTF-8/en_IE.UTF-8/en_IE.UTF-8/C/en_IE.UTF-8/en_IE.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] BiocInstaller_1.12.0

loaded via a namespace (and not attached):
[1] tools_3.0.2
> 

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