[BioC] tudelft.CytoscapeRPC.CytoscapeRPCCallHandler: width is too small

[Paul Shannon]

Hi Coni,

Inasmuch as things like this usually have a deterministic cause :} -- maybe you could check the free memory in your computer when the error message appears.   Perhaps it is caused by an absence of free memory, a phenomenon which ought not to make a difference in anything but speed, but which I have seen lead to bizarre effects on macos.  

The macos /Applications/Utilities/Activity Monitor  is a good way to check.   

Let me know how it goes.

 - Paul

On Jan 17, 2014, at 2:10 PM, Coni Horndli wrote:

> Hi Paul,
> 
> Thank you for your response.
> Yes, please forward the question.
> 
> Thanks,
> Coni
> 
> 
> On Jan 17, 2014, at 2:51 PM, Paul Shannon wrote:
> 
>> Hi Coni,
>> 
>> May I forward this question and my not-very-satisfying :{ answer to the Bioconductor list?
>> 
>> - Paul
>> 
>> 
>> On Jan 17, 2014, at 12:36 PM, Coni Horndli wrote:
>> 
>>> Hi Paul,
>>> 
>>> I am using a R code to draw a network in Cytoscape. The code runs fine the first few times but then suddenly I am getting the error below.
>>> When I restart my computer the code runs fine again for a while.
>>> Do you have any idea what the problem could be?
>>> 
>>> Best,
>>> Coni Horndli
>>> 
>>> Error: faultCode:  0  faultString:  Failed to invoke method redraw in class tudelft.CytoscapeRPC.CytoscapeRPCCallHandler: width is too small
>>> 
>>>> sessionInfo()
>>> R version 3.0.2 (2013-09-25)
>>> Platform: x86_64-apple-darwin10.8.0 (64-bit)
>>> 
>>> locale:
>>> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>>> 
>>> attached base packages:
>>> [1] stats     graphics  grDevices utils     datasets  methods   base     
>>> 
>>> other attached packages:
>>> [1] RCytoscape_1.12.0 XMLRPC_0.3-0      graph_1.40.1     
>>> 
>>> loaded via a namespace (and not attached):
>>> [1] BiocGenerics_0.8.0 parallel_3.0.2     RCurl_1.95-4.1     stats4_3.0.2       tools_3.0.2       
>>> [6] XML_3.95-0.2     
>> 
>