[BioC] Error during installation packages

[Elodie Chapeaublanc]

Dear list,

I try to install BrainArray EntrezGene version 12.1 packages (build
genome version hg18) for U95av2 on U133Plus2 affymetrix arrays, but I
have got two errors.

I have got the lastest version of R and Bioconductor :

sessionInfo()
R version 3.0.2 (2013-09-25)
Platform: x86_64-pc-linux-gnu (64-bit)

locale:
[1] LC_CTYPE=fr_FR.UTF-8 LC_NUMERIC=C
[3] LC_TIME=fr_FR.UTF-8 LC_COLLATE=fr_FR.UTF-8
[5] LC_MONETARY=fr_FR.UTF-8 LC_MESSAGES=fr_FR.UTF-8
[7] LC_PAPER=fr_FR.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] parallel stats graphics grDevices utils datasets methods
[8] base

other attached packages:
[1] BiocInstaller_1.12.0 org.Hs.eg.db_2.10.1 RSQLite_0.11.4
[4] DBI_0.2-7 AnnotationDbi_1.24.0 Biobase_2.22.0
[7] BiocGenerics_0.8.0

loaded via a namespace (and not attached):
[1] IRanges_1.20.6 stats4_3.0.2 tools_3.0.2


When I try to install R CMD INSTALL hgu95av2hsentrezg.db_12.1.0.tar.gz,
I have got error message :

* installing to library
‘/home/echapeaublanc/R/x86_64-pc-linux-gnu-library/3.0’
* installing *source* package ‘hgu95av2hsentrezg.db’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Error : .onLoad failed in loadNamespace() for 'hgu95av2hsentrezg.db',
details:
call: checkDBSCHEMA(dbconn, schema)
error: invalid DB schema version (found 2.0, expected 2.1)
Erreur : le chargement a échoué
Exécution arrêtée
ERROR: loading failed
* removing
‘/home/echapeaublanc/R/x86_64-pc-linux-gnu-library/3.0/hgu95av2hsentrezg.db’


For the cdf pacakges : R CMD INSTALL hgu95av2hsentrezgcdf_12.1.0.tar.gz
* installing to library
‘/home/echapeaublanc/R/x86_64-pc-linux-gnu-library/3.0’
* installing *source* package ‘hgu95av2hsentrezgcdf’ ...
ERROR: a 'NAMESPACE' file is required
* removing
‘/home/echapeaublanc/R/x86_64-pc-linux-gnu-library/3.0/hgu95av2hsentrezgcdf’

How can I use the old BrainArray packages ?

Thanks

Elodie

-- 
--
Elodie Chapeaublanc
IE Bioinformatique
Équipe Oncologie Moléculaire
Institut Curie - UMR 144 - CNRS
26 rue d'Ulm - 75248 Paris Cedex 05
Tel: +33 1 56 24 63 57
Email: elodie.chapeaublanc at curie.fr