[BioC] GenomeinfoDB

[Irsan [guest]]

Currently, the GenomeInfoDb does not support Mus musculus. How can I make it available for my local installation? It would be great if it somebody can make it available in the GenomeInfoDb package. I prepared the genes_species.txt file:

circular	auto	sex	NCBI	UCSC
F	T	F	1	chr1
F	T	F	2	chr2
F	T	F	3	chr3
F	T	F	4	chr4
F	T	F	5	chr5
F	T	F	6	chr6
F	T	F	7	chr7
F	T	F	8	chr8
F	T	F	9	chr9
F	T	F	10	chr10
F	T	F	11	chr11
F	T	F	12	chr12
F	T	F	13	chr13
F	T	F	14	chr14
F	T	F	15	chr15
F	T	F	16	chr16
F	T	F	17	chr17
F	T	F	18	chr18
F	T	F	19	chr19
F	F	T	X	chrX
F	F	T	Y	chrY
T	F	F	MT	chrM

 -- output of sessionInfo(): 

R version 3.1.0 (2014-04-10)
Platform: x86_64-pc-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base 

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