[BioC] How to hide or suppress note about ward method in clValid package?

Kaj Chokeshaiusaha [guest] guest at bioconductor.org
Mon Jul 21 16:13:38 CEST 2014


Dear R helpers,

I've used clValid package and use these command lines as following.
one2one.stability.hk <- clValid(obj=t(prep), nClust=c(2:4),  
	      clMethods = c("hierarchical", "diana",
			    "fanny","som","model"), 
	      validation = "stability",
	      maxitems = 13,
	      metric = "correlation", method = "ward", 
	      neighbSize = 10,
	      annotation = NULL,
	      GOcategory = "all",	      goTermFreq=0.05,dropEvidence=NULL,verbose=FALSE)

During the process, the message 
The "ward" method has been renamed to "ward.D"; note new"ward.D2"
keep showing unrelently. It is not the warnings and I can't manage to find a way to stop them. Would you please suggest me how to deal with the problem?

Best Regards,
Kaj

 -- output of sessionInfo(): 

R version 3.1.0 (2014-04-10)
Platform: x86_64-pc-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_GB.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_GB.UTF-8        LC_COLLATE=en_GB.UTF-8    
 [5] LC_MONETARY=en_GB.UTF-8    LC_MESSAGES=en_GB.UTF-8   
 [7] LC_PAPER=en_GB.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] clValid_0.6-6  cluster_1.15.2

loaded via a namespace (and not attached):
[1] class_7.3-10


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